IL_8Q4F_230

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q4F_230 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1573

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8Q4F|1|a|U|1851
8Q4F|1|a|U|1852
8Q4F|1|a|A|1853
8Q4F|1|a|A|1854
8Q4F|1|a|U|1855
8Q4F|1|a|U|1856
8Q4F|1|a|G|1857
8Q4F|1|a|A|1858
8Q4F|1|a|U|1859
8Q4F|1|a|G|1860
*
8Q4F|1|a|U|1882
8Q4F|1|a|U|1883
8Q4F|1|a|G|1884
8Q4F|1|a|A|1885
8Q4F|1|a|U|1886
8Q4F|1|a|C|1887
8Q4F|1|a|G|1888
8Q4F|1|a|A|1889
8Q4F|1|a|A|1890
8Q4F|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains