IL_8Q5I_008

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GC*GACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_008 not in the Motif Atlas

Homologous match to IL_8C3A_011

Geometric discrepancy: 0.2025

The information below is about IL_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93525.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8Q5I|1|1|G|176
8Q5I|1|1|C|177
*
8Q5I|1|1|G|238
8Q5I|1|1|A|239
8Q5I|1|1|C|240
8Q5I|1|1|C|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AI

Ribosomal protein L29

Chain AK

60S ribosomal protein L37-B

Chain t

60S ribosomal protein L13