IL_8Q5I_028

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_028 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0547

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8Q5I|1|1|U|830
8Q5I|1|1|G|831
8Q5I|1|1|A|832
8Q5I|1|1|A|833
8Q5I|1|1|G|834
*
8Q5I|1|1|U|851
8Q5I|1|1|G|852
8Q5I|1|1|G|853
8Q5I|1|1|A|854
8Q5I|1|1|G|855

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-B

Chain z

60S ribosomal protein L19-A