IL_8Q5I_067

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8Q5I|1|1|C|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_067 not in the Motif Atlas

Geometric match to IL_5TBW_069

Geometric discrepancy: 0.0887

The information below is about IL_5TBW_069

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8Q5I|1|1|C|1665
8Q5I|1|1|C|1666
*
8Q5I|1|1|G|1774
8Q5I|1|1|C|1775
8Q5I|1|1|G|1776

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain z

60S ribosomal protein L19-A