IL_8Q5I_087
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8Q5I|1|1|A|2259, 8Q5I|1|1|C|2265, 8Q5I|1|1|C|2284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_087 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.0676
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8Q5I|1|1|C|2255
8Q5I|1|1|C|2256
8Q5I|1|1|A|2257
8Q5I|1|1|A|2258
8Q5I|1|1|A|2259
8Q5I|1|1|U|2260
8Q5I|1|1|G|2261
8Q5I|1|1|C|2262
8Q5I|1|1|C|2263
8Q5I|1|1|U|2264
8Q5I|1|1|C|2265
8Q5I|1|1|G|2266
*
8Q5I|1|1|C|2282
8Q5I|1|1|G|2283
8Q5I|1|1|C|2284
8Q5I|1|1|G|2285
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AO
- 60S ribosomal protein L41
Coloring options: