IL_8Q5I_130

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_130 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.2129

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8Q5I|1|1|A|3307
8Q5I|1|1|G|3308
8Q5I|1|1|A|3309
8Q5I|1|1|G|3310
*
8Q5I|1|1|C|3325
8Q5I|1|1|G|3326
8Q5I|1|1|A|3327
8Q5I|1|1|U|3328

Current chains

Chain 1

25S rRNA

Nearby chains

Chain J

40S ribosomal protein S8

Chain z

60S ribosomal protein L19-A