IL_8Q5I_152

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8Q5I|1|A|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_152 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0611

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8Q5I|1|A|G|141
8Q5I|1|A|G|142
8Q5I|1|A|A|143
8Q5I|1|A|U|144
8Q5I|1|A|A|145
8Q5I|1|A|A|146
8Q5I|1|A|C|147
*
8Q5I|1|A|G|163
8Q5I|1|A|C|164
8Q5I|1|A|U|165
8Q5I|1|A|A|166
8Q5I|1|A|A|167
8Q5I|1|A|U|168
8Q5I|1|A|A|169
8Q5I|1|A|C|170

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6

Chain Z

40S ribosomal protein S24