IL_8Q5I_187
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GUCAG*CUUGGAUU
- Length
- 13 nucleotides
- Bulged bases
- 8Q5I|1|A|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_187 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1306
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8Q5I|1|A|G|880
8Q5I|1|A|U|881
8Q5I|1|A|C|882
8Q5I|1|A|A|883
8Q5I|1|A|G|884
*
8Q5I|1|A|C|895
8Q5I|1|A|U|896
8Q5I|1|A|U|897
8Q5I|1|A|G|898
8Q5I|1|A|G|899
8Q5I|1|A|A|900
8Q5I|1|A|U|901
8Q5I|1|A|U|902
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 40S ribosomal protein S1
- Chain P
- 40S ribosomal protein S14-A
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