IL_8Q5I_194
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_194 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0678
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8Q5I|1|A|G|1096
8Q5I|1|A|G|1097
8Q5I|1|A|A|1098
8Q5I|1|A|G|1099
8Q5I|1|A|U|1100
8Q5I|1|A|A|1101
8Q5I|1|A|U|1102
8Q5I|1|A|G|1103
*
8Q5I|1|A|U|1114
8Q5I|1|A|G|1115
8Q5I|1|A|A|1116
8Q5I|1|A|A|1117
8Q5I|1|A|A|1118
8Q5I|1|A|C|1119
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AO
- 60S ribosomal protein L41
- Chain Y
- Ribosomal protein S23 (S12)
Coloring options: