IL_8Q5I_205

3D structure

PDB id

8Q5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with cephaeline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Q5I_205 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.074

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8Q5I|1|A|U|1275
8Q5I|1|A|G|1276
8Q5I|1|A|G|1277
*
8Q5I|1|A|C|1308
8Q5I|1|A|G|1309
8Q5I|1|A|A|1310

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S0

Chain D

Ribosomal protein S5

Chain S

40S ribosomal protein S17-B