IL_8Q5I_223
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CUCC*GCUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Q5I_223 not in the Motif Atlas
- Homologous match to IL_8C3A_479
- Geometric discrepancy: 0.0997
- The information below is about IL_8C3A_479
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8Q5I|1|A|C|1662
8Q5I|1|A|U|1663
8Q5I|1|A|C|1664
8Q5I|1|A|C|1665
*
8Q5I|1|A|G|1710
8Q5I|1|A|C|1711
8Q5I|1|A|U|1712
8Q5I|1|A|G|1713
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 7
- 60S ribosomal protein L24-A
- Chain H
- 40S ribosomal protein S6
- Chain J
- 40S ribosomal protein S8
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