IL_8QBT_008
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_008 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0547
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8QBT|1|A|C|239
8QBT|1|A|C|240
8QBT|1|A|A|241
8QBT|1|A|G|242
8QBT|1|A|U|243
8QBT|1|A|A|244
8QBT|1|A|G|245
*
8QBT|1|A|C|253
8QBT|1|A|G|254
8QBT|1|A|A|255
8QBT|1|A|A|256
8QBT|1|A|C|257
8QBT|1|A|G|258
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain d
- Large ribosomal subunit protein bL35
Coloring options: