IL_8QBT_017

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8QBT|1|A|G|801, 8QBT|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0503

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8QBT|1|A|G|674
8QBT|1|A|A|675
8QBT|1|A|A|676
8QBT|1|A|A|677
8QBT|1|A|C|678
*
8QBT|1|A|G|799
8QBT|1|A|A|800
8QBT|1|A|G|801
8QBT|1|A|A|802
8QBT|1|A|U|803
8QBT|1|A|A|804
8QBT|1|A|G|805
8QBT|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

50S ribosomal protein L15