3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QBT_055 not in the Motif Atlas
Homologous match to IL_5J7L_300
Geometric discrepancy: 0.0591
The information below is about IL_5J7L_300
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8QBT|1|A|U|1474
8QBT|1|A|G|1475
8QBT|1|A|U|1476
8QBT|1|A|A|1477
8QBT|1|A|G|1478
*
8QBT|1|A|U|1513
8QBT|1|A|G|1514
8QBT|1|A|A|1515
8QBT|1|A|G|1516
8QBT|1|A|G|1517

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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