IL_8QBT_125
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAA*UGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_125 not in the Motif Atlas
- Homologous match to IL_5J7L_009
- Geometric discrepancy: 0.0992
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8QBT|1|i|G|128
8QBT|1|i|A|129
8QBT|1|i|A|130
8QBT|1|i|A|131
*
8QBT|1|i|U|231
8QBT|1|i|G|232
8QBT|1|i|C|233
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 2
- 30S ribosomal protein S20
- Chain y
- Small ribosomal subunit protein uS17
Coloring options: