IL_8QBT_131
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8QBT|1|i|U|244, 8QBT|1|i|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_131 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.0501
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QBT|1|i|G|242
8QBT|1|i|A|243
8QBT|1|i|U|244
8QBT|1|i|U|245
8QBT|1|i|A|246
8QBT|1|i|G|247
*
8QBT|1|i|C|277
8QBT|1|i|G|278
8QBT|1|i|A|279
8QBT|1|i|C|280
8QBT|1|i|G|281
8QBT|1|i|A|282
8QBT|1|i|U|283
8QBT|1|i|C|284
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain t
- 30S ribosomal protein S12
- Chain y
- Small ribosomal subunit protein uS17
Coloring options: