3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGGAG*UC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QBT_153 not in the Motif Atlas
Homologous match to IL_4LFB_032
Geometric discrepancy: 0.0549
The information below is about IL_4LFB_032
Detailed Annotation
Left turn
Broad Annotation
Left turn
Motif group
IL_29346.3
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

8QBT|1|i|G|774
8QBT|1|i|G|775
8QBT|1|i|G|776
8QBT|1|i|A|777
8QBT|1|i|G|778
*
8QBT|1|i|U|804
8QBT|1|i|C|805

Current chains

Chain i
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain C
Large ribosomal subunit protein uL2
Chain s
30S ribosomal protein S11

Coloring options:


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