IL_8QBT_155
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_155 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0639
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|i|G|887
8QBT|1|i|G|888
8QBT|1|i|A|889
8QBT|1|i|G|890
8QBT|1|i|U|891
8QBT|1|i|A|892
8QBT|1|i|C|893
8QBT|1|i|G|894
*
8QBT|1|i|U|905
8QBT|1|i|A|906
8QBT|1|i|A|907
8QBT|1|i|A|908
8QBT|1|i|A|909
8QBT|1|i|C|910
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain t
- 30S ribosomal protein S12
Coloring options: