IL_8QBT_176
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QBT_176 not in the Motif Atlas
- Geometric match to IL_5MWI_004
- Geometric discrepancy: 0.1384
- The information below is about IL_5MWI_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 213
Unit IDs
8QBT|1|i|G|1405
8QBT|1|i|U|1406
8QBT|1|i|C|1407
*
8QBT|1|i|G|1494
8QBT|1|i|U|1495
8QBT|1|i|C|1496
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain t
- 30S ribosomal protein S12
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