3D structure

PDB id
8QBT (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli ApdP-stalled ribosomal complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QBT_184 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0297
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

8QBT|1|A|G|1666
8QBT|1|A|G|1667
8QBT|1|A|A|1668
8QBT|1|A|A|1669
8QBT|1|A|C|1670
8QBT|1|A|U|1671
8QBT|1|A|A|1672
8QBT|1|A|G|1673
8QBT|1|A|G|1674
*
8QBT|1|A|C|1990
8QBT|1|A|U|1991
8QBT|1|A|G|1992
8QBT|1|A|U|1993
8QBT|1|A|C|1994

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
Large ribosomal subunit protein uL14

Coloring options:


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