IL_8QBT_185

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QBT_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0546

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8QBT|1|A|U|1851
8QBT|1|A|U|1852
8QBT|1|A|A|1853
8QBT|1|A|A|1854
8QBT|1|A|U|1855
8QBT|1|A|U|1856
8QBT|1|A|G|1857
8QBT|1|A|A|1858
8QBT|1|A|U|1859
8QBT|1|A|G|1860
*
8QBT|1|A|U|1882
8QBT|1|A|U|1883
8QBT|1|A|G|1884
8QBT|1|A|A|1885
8QBT|1|A|U|1886
8QBT|1|A|C|1887
8QBT|1|A|G|1888
8QBT|1|A|A|1889
8QBT|1|A|A|1890
8QBT|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA