IL_8QCQ_030

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_030 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0942

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

8QCQ|1|A|G|911
8QCQ|1|A|C|912
8QCQ|1|A|A|913
8QCQ|1|A|C|914
8QCQ|1|A|U|915
*
8QCQ|1|A|A|956
8QCQ|1|A|A|957
8QCQ|1|A|A|958
8QCQ|1|A|C|959

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16