IL_8QCQ_045

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

8QCQ|1|A|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_045 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.1584

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8QCQ|1|A|G|1259
8QCQ|1|A|A|1260
8QCQ|1|A|C|1261
*
8QCQ|1|A|G|1268
8QCQ|1|A|A|1269
8QCQ|1|A|C|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain R

50S ribosomal protein L21