IL_8QCQ_064

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

8QCQ|1|A|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_064 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1641

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8QCQ|1|A|U|1756
8QCQ|1|A|G|1757
8QCQ|1|A|U|1758
8QCQ|1|A|U|1759
8QCQ|1|A|A|1760
8QCQ|1|A|G|1761
*
8QCQ|1|A|C|1772
8QCQ|1|A|G|1773
8QCQ|1|A|A|1774
8QCQ|1|A|G|1775
8QCQ|1|A|A|1776

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA