IL_8QCQ_066

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

8QCQ|1|A|G|1830, 8QCQ|1|A|A|1845, 8QCQ|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_066 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0482

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8QCQ|1|A|U|1827
8QCQ|1|A|G|1828
8QCQ|1|A|C|1829
8QCQ|1|A|G|1830
8QCQ|1|A|A|1831
8QCQ|1|A|A|1832
8QCQ|1|A|G|1833
*
8QCQ|1|A|C|1842
8QCQ|1|A|G|1843
8QCQ|1|A|A|1844
8QCQ|1|A|A|1845
8QCQ|1|A|G|1846
8QCQ|1|A|U|1847
8QCQ|1|A|A|1848
8QCQ|1|A|U|1849
8QCQ|1|A|A|1850

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA