IL_8QCQ_072

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_072 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.116

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8QCQ|1|A|U|1893
8QCQ|1|A|U|1894
8QCQ|1|A|A|1895
8QCQ|1|A|G|1896
*
8QCQ|1|A|C|1903
8QCQ|1|A|G|1904
8QCQ|1|A|A|1905
8QCQ|1|A|A|1906
8QCQ|1|A|G|1907

Current chains

Chain A

23S rRNA

Nearby chains