IL_8QCQ_088
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 8QCQ|1|A|U|2520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_088 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.0463
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
8QCQ|1|A|A|2488
8QCQ|1|A|U|2489
8QCQ|1|A|C|2490
*
8QCQ|1|A|G|2518
8QCQ|1|A|G|2519
8QCQ|1|A|U|2520
8QCQ|1|A|U|2521
8QCQ|1|A|U|2522
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
- Chain W
- Large ribosomal subunit protein bL27
- Chain y
- Transfer RNA; tRNA
Coloring options: