IL_8QCQ_091

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8QCQ|1|A|G|2605, 8QCQ|1|A|A|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_091 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0778

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

8QCQ|1|A|C|2539
8QCQ|1|A|U|2540
8QCQ|1|A|C|2541
*
8QCQ|1|A|G|2603
8QCQ|1|A|C|2604
8QCQ|1|A|G|2605
8QCQ|1|A|A|2606
8QCQ|1|A|G|2607

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 7

ApdA nascent chain

Chain D

50S ribosomal protein L3