IL_8QCQ_120

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAC*GAC

Length

9 nucleotides

Bulged bases

8QCQ|1|a|A|128, 8QCQ|1|a|A|129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_120 not in the Motif Atlas

Geometric match to IL_4V9F_072

Geometric discrepancy: 0.3462

The information below is about IL_4V9F_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8QCQ|1|a|G|125
8QCQ|1|a|G|126
8QCQ|1|a|U|127
8QCQ|1|a|A|128
8QCQ|1|a|A|129
8QCQ|1|a|C|130
*
8QCQ|1|a|G|239
8QCQ|1|a|A|240
8QCQ|1|a|C|241

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20