IL_8QCQ_122

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UAA*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAA,UUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_122 not in the Motif Atlas

Geometric match to IL_406D_002

Geometric discrepancy: 0.2661

The information below is about IL_406D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8QCQ|1|a|U|138
8QCQ|1|a|A|139
8QCQ|1|a|A|140
*
8QCQ|1|a|U|230
8QCQ|1|a|U|231
8QCQ|1|a|A|232

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20