IL_8QCQ_132

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_132 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.2155

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8QCQ|1|a|G|454
8QCQ|1|a|G|455
8QCQ|1|a|A|456
8QCQ|1|a|A|457
8QCQ|1|a|G|458
*
8QCQ|1|a|C|492
8QCQ|1|a|G|493
8QCQ|1|a|G|494
8QCQ|1|a|U|495
8QCQ|1|a|A|496
8QCQ|1|a|C|497

Current chains

Chain a

16S rRNA

Nearby chains