IL_8QCQ_134

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGC*GUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_134 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.2623

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8QCQ|1|a|G|464
8QCQ|1|a|U|465
8QCQ|1|a|G|466
8QCQ|1|a|C|467
*
8QCQ|1|a|G|483
8QCQ|1|a|U|484
8QCQ|1|a|A|485
8QCQ|1|a|C|486

Current chains

Chain a

16S rRNA

Nearby chains