IL_8QCQ_154

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8QCQ|1|a|G|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QCQ_154 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8QCQ|1|a|G|935
8QCQ|1|a|G|936
8QCQ|1|a|G|937
*
8QCQ|1|a|U|1399
8QCQ|1|a|U|1400

Current chains

Chain a

16S rRNA

Nearby chains

Chain 8

mRNA