IL_8QFD_010

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8QFD|1|5|C|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_010 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.348

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8QFD|1|5|C|190
8QFD|1|5|C|191
*
8QFD|1|5|G|239
8QFD|1|5|C|240
8QFD|1|5|G|241

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26