IL_8QFD_041
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_041 not in the Motif Atlas
- Geometric match to IL_5J7L_263
- Geometric discrepancy: 0.0894
- The information below is about IL_5J7L_263
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8QFD|1|5|C|1543
8QFD|1|5|G|1544
8QFD|1|5|A|1545
8QFD|1|5|A|1546
8QFD|1|5|G|1547
*
8QFD|1|5|U|1564
8QFD|1|5|G|1565
8QFD|1|5|G|1566
8QFD|1|5|A|1567
8QFD|1|5|G|1568
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- 60S ribosomal protein L37a
Coloring options: