IL_8QFD_051
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8QFD|1|5|G|1733
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_051 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0705
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
8QFD|1|5|G|1731
8QFD|1|5|C|1732
8QFD|1|5|G|1733
8QFD|1|5|A|1734
8QFD|1|5|A|1735
8QFD|1|5|U|1736
*
8QFD|1|5|A|1778
8QFD|1|5|A|1779
8QFD|1|5|A|1780
8QFD|1|5|C|1781
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
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