IL_8QFD_086
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 8QFD|1|5|U|2872
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_086 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.0653
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8QFD|1|5|C|2859
8QFD|1|5|G|2860
8QFD|1|5|U|2861
8QFD|1|5|A|2862
8QFD|1|5|A|2863
8QFD|1|5|C|2864
*
8QFD|1|5|G|2869
8QFD|1|5|G|2870
8QFD|1|5|A|2871
8QFD|1|5|U|2872
8QFD|1|5|A|2873
8QFD|1|5|A|2874
8QFD|1|5|G|2875
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain p
- 60S ribosomal protein L37a
Coloring options: