IL_8QFD_090
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8QFD|1|5|A|3663, 8QFD|1|5|U|3679, 8QFD|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_090 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0596
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QFD|1|5|C|3660
8QFD|1|5|G|3661
8QFD|1|5|A|3662
8QFD|1|5|A|3663
8QFD|1|5|G|3664
8QFD|1|5|G|3665
*
8QFD|1|5|U|3677
8QFD|1|5|G|3678
8QFD|1|5|U|3679
8QFD|1|5|U|3680
8QFD|1|5|G|3681
8QFD|1|5|A|3682
8QFD|1|5|C|3683
8QFD|1|5|G|3684
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain p
- 60S ribosomal protein L37a
Coloring options: