IL_8QFD_097

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8QFD|1|5|A|3785, 8QFD|1|5|C|3791, 8QFD|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_097 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0884

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8QFD|1|5|C|3781
8QFD|1|5|C|3782
8QFD|1|5|A|3783
8QFD|1|5|A|3784
8QFD|1|5|A|3785
8QFD|1|5|U|3786
8QFD|1|5|G|3787
8QFD|1|5|C|3788
8QFD|1|5|C|3789
8QFD|1|5|U|3790
8QFD|1|5|C|3791
8QFD|1|5|G|3792
*
8QFD|1|5|C|3808
8QFD|1|5|G|3809
8QFD|1|5|C|3810
8QFD|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains