IL_8QFD_103
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAUGAG*CUGAUCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QFD_103 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3788
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QFD|1|5|C|3948
8QFD|1|5|A|3949
8QFD|1|5|U|3950
8QFD|1|5|G|3951
8QFD|1|5|A|3952
8QFD|1|5|G|3953
*
8QFD|1|5|C|4059
8QFD|1|5|U|4060
8QFD|1|5|G|4061
8QFD|1|5|A|4062
8QFD|1|5|U|4063
8QFD|1|5|C|4064
8QFD|1|5|G|4065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain i
- 60S ribosomal protein L36
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