IL_8QFD_104

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_104 not in the Motif Atlas

Geometric match to IL_8C3A_149

Geometric discrepancy: 0.2084

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8QFD|1|5|G|3955
8QFD|1|5|G|3956
8QFD|1|5|U|3957
8QFD|1|5|G|3958
8QFD|1|5|U|3959
8QFD|1|5|A|3960
8QFD|1|5|G|3961
8QFD|1|5|A|3962
8QFD|1|5|A|3963
8QFD|1|5|U|3964
8QFD|1|5|A|3965
8QFD|1|5|A|3966
*
8QFD|1|5|U|4055
8QFD|1|5|A|4056
8QFD|1|5|C|4057

Current chains

Chain 5

28S rRNA

Nearby chains