IL_8QFD_112

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8QFD|1|5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QFD_112 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2684

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8QFD|1|5|G|4347
8QFD|1|5|A|4348
8QFD|1|5|C|4349
8QFD|1|5|C|4350
*
8QFD|1|5|G|4364
8QFD|1|5|C|4365

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain o

60S ribosomal protein L36a