IL_8QFD_153

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

8QFD|1|5|G|114, 8QFD|1|5|U|145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|113
8QFD|1|5|G|114
8QFD|1|5|A|115
8QFD|1|5|A|116
8QFD|1|5|U|117
*
8QFD|1|5|A|142
8QFD|1|5|C|143
8QFD|1|5|A|144
8QFD|1|5|U|145
8QFD|1|5|G|146
8QFD|1|5|U|147
8QFD|1|5|G|148

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35