IL_8QFD_158

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QFD|1|5|C|4466
8QFD|1|5|A|4467
8QFD|1|5|U|4468
8QFD|1|5|U|4469
8QFD|1|5|G|4470
*
8QFD|1|5|C|4485
8QFD|1|5|C|4486
8QFD|1|5|A|4487
8QFD|1|5|A|4488
8QFD|1|5|G|4489
8QFD|1|5|C|4490
8QFD|1|5|G|4491

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain H

60S ribosomal protein L9

Chain V

60S ribosomal protein L23

Chain m

Ubiquitin-60S ribosomal protein L40