IL_8QK7_128

3D structure

PDB id

8QK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UAA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8QK7|1|2|U|244, 8QK7|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QK7_128 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1051

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8QK7|1|2|G|242
8QK7|1|2|A|243
8QK7|1|2|U|244
8QK7|1|2|U|245
8QK7|1|2|A|246
8QK7|1|2|G|247
*
8QK7|1|2|C|277
8QK7|1|2|G|278
8QK7|1|2|A|279
8QK7|1|2|C|280
8QK7|1|2|G|281
8QK7|1|2|A|282
8QK7|1|2|U|283
8QK7|1|2|C|284

Current chains

Chain 2

16S rRNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17