IL_8QO9_001
3D structure
- PDB id
- 8QO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosomal B complex protomer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.29 Å
Loop
- Sequence
- GUA*UUAU
- Length
- 7 nucleotides
- Bulged bases
- 8QO9|1|Z|A|156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QO9_001 not in the Motif Atlas
- Geometric match to IL_353D_001
- Geometric discrepancy: 0.1875
- The information below is about IL_353D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
8QO9|1|2|G|33
8QO9|1|2|U|34
8QO9|1|2|A|35
*
8QO9|1|Z|U|154
8QO9|1|Z|U|155
8QO9|1|Z|A|156
8QO9|1|Z|U|157
Current chains
- Chain 2
- U2 snRNA
- Chain Z
- MINX pre-mRNA
Nearby chains
- Chain B1
- Splicing factor 3B subunit 1
- Chain B6
- Splicing factor 3B subunit 6
- Chain BP
- PHD finger-like domain-containing protein 5A
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