IL_8QO9_002
3D structure
- PDB id
- 8QO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosomal B complex protomer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.29 Å
Loop
- Sequence
- GUA*UAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QO9_002 not in the Motif Atlas
- Geometric match to IL_4LFB_061
- Geometric discrepancy: 0.1517
- The information below is about IL_4LFB_061
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
8QO9|1|2|G|36
8QO9|1|2|U|37
8QO9|1|2|A|38
*
8QO9|1|Z|U|151
8QO9|1|Z|A|152
8QO9|1|Z|C|153
Current chains
- Chain 2
- U2 snRNA
- Chain Z
- MINX pre-mRNA
Nearby chains
- Chain B1
- Splicing factor 3B subunit 1
- Chain B2
- Splicing factor 3B subunit 2
- Chain BP
- PHD finger-like domain-containing protein 5A
- Chain G
- Splicing factor 3A subunit 2
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