IL_8QO9_013
3D structure
- PDB id
- 8QO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human spliceosomal B complex protomer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.29 Å
Loop
- Sequence
- GAUAC*GAGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QO9_013 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3462
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8QO9|1|6|G|38
8QO9|1|6|A|39
8QO9|1|6|U|40
8QO9|1|6|A|41
8QO9|1|6|C|42
*
8QO9|1|Z|G|63
8QO9|1|Z|A|64
8QO9|1|Z|G|65
8QO9|1|Z|C|66
8QO9|1|Z|C|67
Current chains
- Chain 6
- U6 snRNA
- Chain Z
- MINX pre-mRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Thioredoxin-like protein 4A
- Chain N
- Pre-mRNA-processing factor 6
- Chain X
- WW domain-binding protein 4
- Chain r
- Zinc finger matrin-type protein 2
Coloring options: