IL_8QOA_177

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QOA_177 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0486

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8QOA|1|a|U|1851
8QOA|1|a|U|1852
8QOA|1|a|A|1853
8QOA|1|a|A|1854
8QOA|1|a|U|1855
8QOA|1|a|U|1856
8QOA|1|a|G|1857
8QOA|1|a|A|1858
8QOA|1|a|U|1859
8QOA|1|a|G|1860
*
8QOA|1|a|U|1882
8QOA|1|a|U|1883
8QOA|1|a|G|1884
8QOA|1|a|A|1885
8QOA|1|a|U|1886
8QOA|1|a|C|1887
8QOA|1|a|G|1888
8QOA|1|a|A|1889
8QOA|1|a|A|1890
8QOA|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains