IL_8QOI_006
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QOI_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0798
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|L5|C|81
8QOI|1|L5|U|82
8QOI|1|L5|C|83
8QOI|1|L5|A|84
8QOI|1|L5|G|85
8QOI|1|L5|U|86
8QOI|1|L5|A|87
8QOI|1|L5|A|88
*
8QOI|1|L5|U|96
8QOI|1|L5|G|97
8QOI|1|L5|A|98
8QOI|1|L5|A|99
8QOI|1|L5|C|100
8QOI|1|L5|A|101
8QOI|1|L5|G|102
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- Large ribosomal subunit protein uL15
Coloring options: